Pontibacter soli sp. nov., isolated from the soil of a Populus rhizosphere in Xinjiang, China.
Identifieur interne : 002099 ( Main/Exploration ); précédent : 002098; suivant : 002100Pontibacter soli sp. nov., isolated from the soil of a Populus rhizosphere in Xinjiang, China.
Auteurs : Jun Dai [République populaire de Chine] ; Mengbo Xu ; Fang Peng ; Fan Jiang ; Xiong Chen ; Zhi Wang ; Chengxiang FangSource :
- Antonie van Leeuwenhoek [ 1572-9699 ] ; 2014.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Acides gras (métabolisme), Chine (MeSH), Composition en bases nucléiques (MeSH), Cytophagaceae (classification), Cytophagaceae (génétique), Cytophagaceae (isolement et purification), Cytophagaceae (métabolisme), Données de séquences moléculaires (MeSH), Microbiologie du sol (MeSH), Phylogenèse (MeSH), Populus (croissance et développement), Populus (microbiologie), Rhizosphère (MeSH), Techniques de typage bactérien (MeSH).
- MESH :
- composition chimique : Acides gras, Cytophagaceae.
- croissance et développement : Populus.
- génétique : ADN bactérien, ARN ribosomique 16S, Cytophagaceae.
- isolement et purification : Cytophagaceae.
- microbiologie : Populus.
- métabolisme : Acides gras, Cytophagaceae.
- Chine, Composition en bases nucléiques, Données de séquences moléculaires, Microbiologie du sol, Phylogenèse, Rhizosphère, Techniques de typage bactérien.
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), Cytophagaceae (classification), Cytophagaceae (genetics), Cytophagaceae (isolation & purification), Cytophagaceae (metabolism), DNA, Bacterial (genetics), Fatty Acids (chemistry), Fatty Acids (metabolism), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Populus (growth & development), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Soil Microbiology (MeSH).
- MESH :
- chemical , chemistry : Fatty Acids.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- chemical , metabolism : Fatty Acids.
- geographic : China.
- classification : Cytophagaceae.
- genetics : Cytophagaceae.
- growth & development : Populus.
- isolation & purification : Cytophagaceae.
- metabolism : Cytophagaceae.
- microbiology : Populus.
- Bacterial Typing Techniques, Base Composition, Molecular Sequence Data, Phylogeny, Rhizosphere, Soil Microbiology.
Abstract
A Gram-stain negative, rod-shaped, non-motile and pink-pigmented bacterial strain, designated strain HYL7-26(T), was isolated from a soil in the Desert Park of Huyang forest located in Xinjiang, China. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain HYL7-26(T) belongs to the genus Pontibacter in the family Cytophagaceae. The 16S rRNA gene sequence similarity between strain HYL7-26(T) and type strains of Pontibacter species ranged from 93.2 to 96.0 %. Strain HYL7-26(T) was found to contain iso-C15:0 (15.9 %), iso-C17:0 3-OH (9.5 %) and summed feature 4 (comprising anteiso-C17:1 B and/or iso-C17:1 I, 21.0 %, as defined by the MIDI system) as the major cellular fatty acids. The major respiratory quinone was identified as MK-7 and the DNA G+C content was determined to be 43.8 mol%. sym-Homospermidine was the major polyamine observed in the cells. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain HYL7-26(T) is considered to represent a novel species of the genus Pontibacter, for which the name Pontibacter soli sp. nov. is proposed. The type strain is HYL7-26(T) (=CCTCC AB 206240(T) = NRRL B-59490(T)).
DOI: 10.1007/s10482-013-0053-8
PubMed: 24129879
Affiliations:
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type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A Gram-stain negative, rod-shaped, non-motile and pink-pigmented bacterial strain, designated strain HYL7-26(T), was isolated from a soil in the Desert Park of Huyang forest located in Xinjiang, China. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain HYL7-26(T) belongs to the genus Pontibacter in the family Cytophagaceae. The 16S rRNA gene sequence similarity between strain HYL7-26(T) and type strains of Pontibacter species ranged from 93.2 to 96.0 %. Strain HYL7-26(T) was found to contain iso-C15:0 (15.9 %), iso-C17:0 3-OH (9.5 %) and summed feature 4 (comprising anteiso-C17:1 B and/or iso-C17:1 I, 21.0 %, as defined by the MIDI system) as the major cellular fatty acids. The major respiratory quinone was identified as MK-7 and the DNA G+C content was determined to be 43.8 mol%. sym-Homospermidine was the major polyamine observed in the cells. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain HYL7-26(T) is considered to represent a novel species of the genus Pontibacter, for which the name Pontibacter soli sp. nov. is proposed. The type strain is HYL7-26(T) (=CCTCC AB 206240(T) = NRRL B-59490(T)). </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24129879</PMID><DateCompleted><Year>2014</Year><Month>09</Month><Day>18</Day></DateCompleted><DateRevised><Year>2014</Year><Month>01</Month><Day>06</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1572-9699</ISSN><JournalIssue CitedMedium="Internet"><Volume>105</Volume><Issue>1</Issue><PubDate><Year>2014</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Antonie van Leeuwenhoek</Title><ISOAbbreviation>Antonie Van Leeuwenhoek</ISOAbbreviation></Journal><ArticleTitle>Pontibacter soli sp. nov., isolated from the soil of a Populus rhizosphere in Xinjiang, China.</ArticleTitle><Pagination><MedlinePgn>65-72</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s10482-013-0053-8</ELocationID><Abstract><AbstractText>A Gram-stain negative, rod-shaped, non-motile and pink-pigmented bacterial strain, designated strain HYL7-26(T), was isolated from a soil in the Desert Park of Huyang forest located in Xinjiang, China. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain HYL7-26(T) belongs to the genus Pontibacter in the family Cytophagaceae. The 16S rRNA gene sequence similarity between strain HYL7-26(T) and type strains of Pontibacter species ranged from 93.2 to 96.0 %. Strain HYL7-26(T) was found to contain iso-C15:0 (15.9 %), iso-C17:0 3-OH (9.5 %) and summed feature 4 (comprising anteiso-C17:1 B and/or iso-C17:1 I, 21.0 %, as defined by the MIDI system) as the major cellular fatty acids. The major respiratory quinone was identified as MK-7 and the DNA G+C content was determined to be 43.8 mol%. sym-Homospermidine was the major polyamine observed in the cells. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain HYL7-26(T) is considered to represent a novel species of the genus Pontibacter, for which the name Pontibacter soli sp. nov. is proposed. The type strain is HYL7-26(T) (=CCTCC AB 206240(T) = NRRL B-59490(T)). </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Dai</LastName><ForeName>Jun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Key Laboratory of Fermentation Engineering (Ministry of Education), Hubei Provincial Cooperative Innovation Center of Industrial Fermentation, College of Bioengineering, Hubei University of Technology, Wuhan, 430068, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Mengbo</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Peng</LastName><ForeName>Fang</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Fan</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Xiong</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Zhi</ForeName><Initials>Z</Initials></Author><Author ValidYN="Y"><LastName>Fang</LastName><ForeName>Chengxiang</ForeName><Initials>C</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>HQ223079</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>10</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Antonie Van Leeuwenhoek</MedlineTA><NlmUniqueID>0372625</NlmUniqueID><ISSNLinking>0003-6072</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D041964" MajorTopicYN="N">Cytophagaceae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="Y">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>07</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>10</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>10</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>10</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>9</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24129879</ArticleId><ArticleId IdType="doi">10.1007/s10482-013-0053-8</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><noCountry><name sortKey="Chen, Xiong" sort="Chen, Xiong" uniqKey="Chen X" first="Xiong" last="Chen">Xiong Chen</name><name sortKey="Fang, Chengxiang" sort="Fang, Chengxiang" uniqKey="Fang C" first="Chengxiang" last="Fang">Chengxiang Fang</name><name sortKey="Jiang, Fan" sort="Jiang, Fan" uniqKey="Jiang F" first="Fan" last="Jiang">Fan Jiang</name><name sortKey="Peng, Fang" sort="Peng, Fang" uniqKey="Peng F" first="Fang" last="Peng">Fang Peng</name><name sortKey="Wang, Zhi" sort="Wang, Zhi" uniqKey="Wang Z" first="Zhi" last="Wang">Zhi Wang</name><name sortKey="Xu, Mengbo" sort="Xu, Mengbo" uniqKey="Xu M" first="Mengbo" last="Xu">Mengbo Xu</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Dai, Jun" sort="Dai, Jun" uniqKey="Dai J" first="Jun" last="Dai">Jun Dai</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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